| Program name | Description |
| antigenic |
Finds antigenic sites in proteins
|
| digest |
Reports on protein proteolytic enzyme or reagent cleavage sites
|
| epestfind |
Finds PEST motifs as potential proteolytic cleavage sites
|
| fuzzpro |
Search for patterns in protein sequences
|
| fuzztran |
Search for patterns in protein sequences (translated)
|
| helixturnhelix |
Identify nucleic acid-binding motifs in protein sequences
|
| oddcomp |
Identify proteins with specified sequence word composition
|
| patmatdb |
Searches protein sequences with a sequence motif
|
| patmatmotifs |
Scan a protein sequence with motifs from the PROSITE database
|
| pepcoil |
Predicts coiled coil regions in protein sequences
|
| preg |
Regular expression search of protein sequence(s)
|
| pscan |
Scans protein sequence(s) with fingerprints from the PRINTS database
|
| sigcleave |
Reports on signal cleavage sites in a protein sequence
|
| echlorop |
Reports presence of chloroplast transit peptides
|
| elipop |
Prediction of lipoproteins
|
| enetnglyc |
Reports N-glycosylation sites in human proteins
|
| enetoglyc |
Reports mucin type GalNAc O-glycosylation sites in mammalian proteins
|
| enetphos |
Reports ser, thr and tyr phosphorylation sites in eukaryotic proteins
|
| eprop |
Reports propeptide cleavage sites in proteins
|
| esignalp |
Reports protein signal cleavage sites
|
| etmhmm |
Reports transmembrane helices
|
| eyinoyang |
Reports O-(beta)-GlcNAc attachment sites
|
| eiprscan |
Motif detection
|
| omeme |
Motif detection
|
| emast |
Motif detection
|
| ememe |
Multiple EM for Motif Elicitation
|
| ememetext |
Multiple EM for Motif Elicitation. Text file only
|